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Deep imitation learning for molecular inverse problems

Neural Information Processing Systems

Many measurement modalities arise from well-understood physical processes and result in information-rich but difficult-to-interpret data. Much of this data still requires laborious human interpretation. This is the case in nuclear magnetic resonance (NMR) spectroscopy, where the observed spectrum of a molecule provides a distinguishing fingerprint of its bond structure. Here we solve the resulting inverse problem: given a molecular formula and a spectrum, can we infer the chemical structure? We show for a wide variety of molecules we can quickly compute the correct molecular structure, and can detect with reasonable certainty when our method cannot. We treat this as a problem of graph-structured prediction, where armed with per-vertex information on a subset of the vertices, we infer the edges and edge types. We frame the problem as a Markov decision process (MDP) and incrementally construct molecules one bond at a time, training a deep neural network via imitation learning, where we learn to imitate a subisomorphic oracle which knows which remaining bonds are correct. Our method is fast, accurate, and is the first among recent chemical-graph generation approaches to exploit per-vertex information and generate graphs with vertex constraints. Our method points the way towards automation of molecular structure identification and potentially active learning for spectroscopy.


Reviews: Deep imitation learning for molecular inverse problems

Neural Information Processing Systems

The paper is clearly written and motivates the interesting application of finding molecular structures given a spectrum well. The structure of the ms could be improved, since there are some distracting jumps between method, experiments and related work. In particular, the evaluation (Sec 4) could be described in more detail and can be confusing at the first reading. For example, the threshold was only mentioned once before and it could be stated again, that it applies to the spectrum, not the geometry. Here, the paper could also benefit from giving an overview of the training and evaluation procedure, e.g. in a flow chart.


Reviews: Deep imitation learning for molecular inverse problems

Neural Information Processing Systems

The paper studies a problem of predicting the molecular structured given its NMR spectrum and the molecular formula, through deep imitation learning. The reviewers find the topic important for cheminformatics and the proposed method relevant and potentially impactful. The write-up of the paper should be improved.


Deep imitation learning for molecular inverse problems

Neural Information Processing Systems

Many measurement modalities arise from well-understood physical processes and result in information-rich but difficult-to-interpret data. Much of this data still requires laborious human interpretation. This is the case in nuclear magnetic resonance (NMR) spectroscopy, where the observed spectrum of a molecule provides a distinguishing fingerprint of its bond structure. Here we solve the resulting inverse problem: given a molecular formula and a spectrum, can we infer the chemical structure? We show for a wide variety of molecules we can quickly compute the correct molecular structure, and can detect with reasonable certainty when our method cannot.


Training Robots without Robots: Deep Imitation Learning for Master-to-Robot Policy Transfer

Kim, Heecheol, Ohmura, Yoshiyuki, Nagakubo, Akihiko, Kuniyoshi, Yasuo

arXiv.org Artificial Intelligence

Deep imitation learning is promising for robot manipulation because it only requires demonstration samples. In this study, deep imitation learning is applied to tasks that require force feedback. However, existing demonstration methods have deficiencies; bilateral teleoperation requires a complex control scheme and is expensive, and kinesthetic teaching suffers from visual distractions from human intervention. This research proposes a new master-to-robot (M2R) policy transfer system that does not require robots for teaching force feedback-based manipulation tasks. The human directly demonstrates a task using a controller. This controller resembles the kinematic parameters of the robot arm and uses the same end-effector with force/torque (F/T) sensors to measure the force feedback. Using this controller, the operator can feel force feedback without a bilateral system. The proposed method can overcome domain gaps between the master and robot using gaze-based imitation learning and a simple calibration method. Furthermore, a Transformer is applied to infer policy from F/T sensory input. The proposed system was evaluated on a bottle-cap-opening task that requires force feedback.


Memory-based gaze prediction in deep imitation learning for robot manipulation

Kim, Heecheol, Ohmura, Yoshiyuki, Kuniyoshi, Yasuo

arXiv.org Artificial Intelligence

Deep imitation learning is a promising approach that does not require hard-coded control rules in autonomous robot manipulation. The current applications of deep imitation learning to robot manipulation have been limited to reactive control based on the states at the current time step. However, future robots will also be required to solve tasks utilizing their memory obtained by experience in complicated environments (e.g., when the robot is asked to find a previously used object on a shelf). In such a situation, simple deep imitation learning may fail because of distractions caused by complicated environments. We propose that gaze prediction from sequential visual input enables the robot to perform a manipulation task that requires memory. The proposed algorithm uses a Transformer-based self-attention architecture for the gaze estimation based on sequential data to implement memory. The proposed method was evaluated with a real robot multi-object manipulation task that requires memory of the previous states.


Transformer-based deep imitation learning for dual-arm robot manipulation

Kim, Heecheol, Ohmura, Yoshiyuki, Kuniyoshi, Yasuo

arXiv.org Artificial Intelligence

Deep imitation learning is promising for solving dexterous manipulation tasks because it does not require an environment model and pre-programmed robot behavior. However, its application to dual-arm manipulation tasks remains challenging. In a dual-arm manipulation setup, the increased number of state dimensions caused by the additional robot manipulators causes distractions and results in poor performance of the neural networks. We address this issue using a self-attention mechanism that computes dependencies between elements in a sequential input and focuses on important elements. A Transformer, a variant of self-attention architecture, is applied to deep imitation learning to solve dual-arm manipulation tasks in the real world. The proposed method has been tested on dual-arm manipulation tasks using a real robot. The experimental results demonstrated that the Transformer-based deep imitation learning architecture can attend to the important features among the sensory inputs, therefore reducing distractions and improving manipulation performance when compared with the baseline architecture without the self-attention mechanisms.


Gaze-based dual resolution deep imitation learning for high-precision dexterous robot manipulation

Kim, Heecheol, Ohmura, Yoshiyuki, Kuniyoshi, Yasuo

arXiv.org Artificial Intelligence

A high-precision manipulation task, such as needle threading, is challenging. Physiological studies have proposed connecting low-resolution peripheral vision and fast movement to transport the hand into the vicinity of an object, and using high-resolution foveated vision to achieve the accurate homing of the hand to the object. The results of this study demonstrate that a deep imitation learning based method, inspired by the gaze-based dual resolution visuomotor control system in humans, can solve the needle threading task. First, we recorded the gaze movements of a human operator who was teleoperating a robot. Then, we used only a high-resolution image around the gaze to precisely control the thread position when it was close to the target. We used a low-resolution peripheral image to reach the vicinity of the target. The experimental results obtained in this study demonstrate that the proposed method enables precise manipulation tasks using a general-purpose robot manipulator and improves computational efficiency.


Deep imitation learning for molecular inverse problems

Jonas, Eric

Neural Information Processing Systems

Many measurement modalities arise from well-understood physical processes and result in information-rich but difficult-to-interpret data. Much of this data still requires laborious human interpretation. This is the case in nuclear magnetic resonance (NMR) spectroscopy, where the observed spectrum of a molecule provides a distinguishing fingerprint of its bond structure. Here we solve the resulting inverse problem: given a molecular formula and a spectrum, can we infer the chemical structure? We show for a wide variety of molecules we can quickly compute the correct molecular structure, and can detect with reasonable certainty when our method cannot.